Category

Genetics

• Genome-wide association studies
• Linkage Disequilibrium Score Regression
• Polygenic Risk Score
• Transcriptome-wide association studies

   

Linear algebra

• Calculate PCA by hand (via eigen-decomposition)
• Calculate SVD by hand (and decompose Spongebob)

   

Bayesian Network

• An Intuitive Explanation of Bayesian Network

   

Inferential Statistics

• Maximum likelihood estimation
• Model the Gene Expression (1): A GLM framework
• Model the Gene Expression (2): Likelihood Ratio Test

   

Bayesian Statistics

• Dive into Bayesian statistics (1): Maximum A Posteriori
• Dive into Bayesian statistics (2): Solve the nasty denominator!
• Dive into Bayesian statistics (3): Markov Chain Monte Carlo
• Dive into Bayesian statistics (4): Posterior predictive distribution
• Dive into Bayesian statistics (5): Intro to PyMC3

   

Hidden Markov Model

• Hidden Markov Model (1) - Markov Chain
• Hidden Markov Model (2) - Forward Backward Propagation

   

Deep learning

   

RNA-seq

• Model the Gene Expression (1): A GLM framework
• Model the Gene Expression (2): Likelihood Ratio Test